One says Vmp = 17.6, the other Vmp = 17.9; very close.
If you can locate data sheets with curve of current vs. voltage or power vs. voltage you'll probably find that even operating a couple volts off MPP results in little loss.
To the extent the cells are of different technology, and the panels have different lamination materials, their curves may respond differently to varying temperature and angle at which sunlight hits them.
Cool is better, so allowing airflow underneath could help.
Flat on the roof doesn't present as much area to the sun, so if your mount allows you to tilt them toward the sun while parked you'll get more power. Much bigger difference than having different panels of the same voltage paralleled, especially in winter when the sun is low.
Oh, and what kind of charge controller? If PWM I think the differences between panels is moot because both are clamped to the battery voltage. Only MPPT makes a difference because then the panels will be at 17.6V not 12 ~ 14V. That would increase power output as much as 10% based on the curves for a 12V panel I have.